Species identification is a cornerstone of biological and ecological studies. Accurate identification underpins effective biodiversity assessment, conservation efforts, and evolutionary research. Traditional methods, while valuable, often face limitations in terms of resolution, efficiency, and cost-effectiveness. Our company leverages the power of Kompetitive Allele-Specific PCR (KASP) genotyping technology to provide cutting-edge species identification services. KASP offers a robust, high-throughput, and cost-effective solution for precise species discrimination, even among closely related taxa.
Fig 1. Kompetitive allele specific PCR (Wikipedia)
Technological Principles
KASP is a fluorescence-based genotyping technology that exploits the inherent specificity of PCR. It works by targeting single nucleotide polymorphisms (SNPs), which are variations at a single base pair in the DNA sequence. These SNPs serve as unique genetic markers that differentiate species.
- SNP Selection: We identify species-specific SNPs that are diagnostic for your target species.
- KASP Assay Design: For each SNP, we design two allele-specific primers, each corresponding to one of the SNP alleles. A common reverse primer is also included. Each allele-specific primer is tagged with a unique tail sequence that is complementary to a fluorescently labeled probe.
- PCR Amplification: Your DNA samples are amplified using the KASP assays. During PCR, only the allele-specific primer that perfectly matches the SNP in the sample will bind and extend.
- Fluorescence Detection: The extended primer enables the corresponding fluorescent probe to bind, generating a specific fluorescent signal.
- Species Identification: By analyzing the combination of fluorescent signals from multiple SNPs, we can accurately identify the species present in your samples.
Technical Features
KASP offers several advantages over traditional species identification methods:
- High Accuracy: KASP is highly specific, enabling accurate discrimination of even closely related species.
- High Throughput: KASP assays are amenable to automation, facilitating rapid and cost-effective analysis of large sample sets.
- Cost-Effectiveness: Compared to other genotyping technologies, KASP offers an economical solution, especially for large-scale projects.
- Versatility: KASP is applicable to a wide range of species and sample types, from plants and animals to microorganisms.
Technical Classifications
KASP genotyping can be classified based on the type of SNPs targeted and the method of detection:
- SNP Types:
Transition SNPs: Involve a change between purine bases (A and G) or between pyrimidine bases (C and T).
Transversion SNPs: Involve a change between a purine and a pyrimidine base.
- Detection Methods:
End-point Fluorescence: Measures the fluorescence signal at the end of the PCR reaction.
Real-time Fluorescence: Monitors the fluorescence signal throughout the PCR reaction..
Application Areas
- Environmental Monitoring and Conservation: Identify species composition in environmental samples to assess ecosystem health and monitor changes over time. Rapidly and accurately detect invasive species to inform management strategies. Monitor populations of endangered species to inform conservation efforts.
- Agriculture and Food Safety: Verify the identity of crops and livestock for breeding programs, traceability, and food authentication. Detect adulteration and fraud in food products by identifying species present.
- Forensic Science and Law Enforcement: Analyze DNA samples for human identification in forensic investigations. Identify species from trace evidence, such as hair, feathers, or bones, to combat wildlife crime..
Environmental Benefits
- Reduced Environmental Impact: KASP requires minimal sample material and reagents, minimizing waste generation.
- Conservation Efforts: By facilitating accurate species identification, KASP aids in biodiversity conservation and the protection of endangered species.
- Sustainable Agriculture: KASP supports sustainable agriculture practices by enabling efficient breeding programs and ensuring food authenticity.
Our Services
As a bio-environmental company specializing in genetic services, we are proud to offer our Kompetitive Allele-Specific PCR (KASP) services for species identification:
- Genomic DNA Analysis: We provide comprehensive genomic DNA analysis, identifying species-specific SNPs and InDels with high precision across a wide range of genomic DNA samples, including complex genomes.
- Custom KASP Assay Design: Our team of experts designs robust and reproducible KASP assays targeted to your SNPs of interest, utilizing customer-provided SNP sequence information.
- High-Throughput Genotyping: With our KASP technology, we can handle large sample numbers and SNP genotyping projects efficiently, making it ideal for both small-scale studies and large-scale breeding programs.
- Species Identification and Germplasm Resource Identification: We apply KASP in various plant-breeding applications, including the identification of germplasm resources and quality control analysis.
- Sex Identification in Dioecious Plants: We use KASP assays to discriminate the sex of plants, which is crucial for optimizing pollination setups in species like Pistacia.
- Germplasm Collection Management: Our KASP services support the management of germplasm collections, ensuring the preservation of genetic diversity.
- Data Reporting and Analysis: We deliver results in an Excel spreadsheet, which can be viewed using our SNPViewer or KlusterCaller software, providing clear and accessible data for further analysis.
Distinctive Service Features
- Superb Accuracy and Performance: Our KASP genotyping boasts an accuracy rate of over 99.8%, ensuring reliable and consistent results.
- Tremendous Flexibility: We offer flexible primer design, which increases the rate of successful assay development and supports various throughput studies.
- Breakthrough Cost Savings: KASP uses a universal reporting system, eliminating the need for expensive labeled assay-specific primers or probes.
- High-Quality Data: Cost benefits enable us to perform more assays, improving the quality of your data and providing deeper insights into species identification.
Contact Us
By leveraging the power of KASP technology, our bio-environmental company is committed to providing the highest standard of genetic services for species identification, ensuring accuracy, efficiency, and cost-effectiveness in our work, please contact us and confirm with our team for more information.
How to Place an Order
Our products and services are for research use only and cannot be used for any clinical purposes.